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Whole genome sequencing of strain PAMC 20958 and one type strain of genus Halocynthiibacter.
A sediment sample collected from the coast of Svalbard, Arctic (78° 55' N, 11° 53' E). The sediment sample was suspended in 20 % glycerol and preserved at -80C until use. Strain PAMC 20958T was isolated by using standard dilution plating method on ZoBell agar containing 15 g bacto agar, 5 g bacto peptone, 1 g yeast extract, and 0.1 g ferric citrate in 1 L of 0.2-μm filtered seawater and incubating the plate at 10 C for 12 days. After determination of the optimum growth temperature, strain PAMC 20958T was maintained routinely on Marine agar (MA; BD Difco) or in marine broth (MB; BD Difco) at 20 °C and preserved as glycerol suspensions (20 % in distilled water, v/v) at -80 °C. Reference strain H. namhaensis KCTC 32362T was obtained from the KCTC (Korean Collection for Type Cultures, Korea) and was maintained routinely on MA at 20 °C. Genome relatedness between PAMC 20958T and H. namhaensis KCTC 32362T was investigated by whole genome sequencing. -Analysis of Bacterial Community in coast of Svalbard, Arctic. -Basic data acquisition of PAMC(Polar and Alpine Microbial Collection). -Academic report of novel strain.
- Entry ID
- KOPRI-KPDC-00000958
- KPDC_PAMC_20958 (Old ID)
- Science Keyword
- ISO Topic
- Biota
- Platforms
- Svalbard(Svalbard, coast of Svalbard, Arctic)
- Instruments
- ADS(Automated DNA Sequencer, MiSeq sequencer system (Illumina))
- Personnel
- Yung Mi Lee (ymlee@kopri.re.kr)
- Research period
- 2010-07-10 ~
- Create/Update Date
- 2017-07-17 / 2017-07-17
- Dataset
- Whole genome sequencing of strain PAMC 20958 and one type strain of genus Halocynthiibacter. Polar Resoureces Preservation & Management System Installation Hong Kum Lee
- Citation
- The data(KOPRI-KPDC-00000958) used in this work was provided by the Korea Polar Research Institute.
- Spatial Coverage
-
POINT
- lat:78.916667, lon:11.883333
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- Raw Data
- File Size 2.48 Mb for 1 item
Category | File Name | Description | Size | Status |
---|---|---|---|---|
Rawdata | KPDC_PAMC_20958.zip | 2.48 Mb | Request required |