Korea Polar Data Center
Scientific observations and results from Antarctica shall
be exchanged and made freely available
be exchanged and made freely available
trimMSmix: a software to debarcode MiSeq sequences
trimMSmix is a python script to trim priming regions, decode according to barcodes, and assemble forward and reverse sequences generated by MiSeq. It handles sequences saved in two files for forward and reverse sequences. Sequence files contain sequences for diverse PCR amplicons produced by diverse primers with barcode. It recognizes primer sequences first to sort different genetic loci and then barcode to sort different samples.
Register faveorites
- Entry ID
- KOPRI-KPDC-00002438
- Copyright
- Personnel
- Soon Gyu Hong (polypore@kopri.re.kr)
- Create/Update Date
- 2023-12-27 / 2023-12-27
- Citation
- The data(KOPRI-KPDC-00002438) used in this work was provided by the Korea Polar Research Institute.
Loading...
Legend
- Raw Data
- File Size 279.1 Kb for 4 items
| Category | File Name | Description | Size | Status |
|---|---|---|---|---|
| Rawdata | Manual_trimMSmix.pdf | manual for trimMSmix | 35.77 Kb | Download |
| Rawdata | trimInfo_example.txt | trimInfo example text file | 2.36 Kb | Download |
| Rawdata | trimInfo_example.xlsx | trimInfo template example Excel file | 212.15 Kb | Download |
| Rawdata | trimMSmix.pyc | trimMSmix: a python script | 28.81 Kb | Download |