Korea Polar Data Center
Scientific observations and results from Antarctica shall
be exchanged and made freely available
be exchanged and made freely available
A software for profile alignment and reference sequence selection
A python script for profile alignment against template sequences in jPhydit format (example, AlignTemplate_Russulales.jpd) and qeury sequences in SQDB format (example, SQDB_example.txt) and reference sequence selection for ITS2, LSU D2, and LSU D1/D2 domains.
Register faveorites
- Entry ID
- KOPRI-KPDC-00003342
- Copyright
- Personnel
- Soon Gyu Hong (polypore@kopri.re.kr)
- Create/Update Date
- 2026-11-13 / 2026-11-13
- Citation
- The data(KOPRI-KPDC-00003342) used in this work was provided by the Korea Polar Research Institute.
Loading...
Legend
- Raw Data
- File Size 342.8 Mb for 8 items
| Category | File Name | Description | Size | Status |
|---|---|---|---|---|
| Rawdata | acc_Albatrellaceae.txt | example for accession list | 4.1 Kb | Download |
| Rawdata | acc_Auriscalpiaceae.txt | example for accession list | 7.54 Kb | Download |
| Rawdata | acc_Russulaceae.txt | example for accession list | 357.93 Kb | Download |
| Rawdata | AlignTemplate_Russulales.jpd | template sequence for alignment, in jPhydit format | 195.82 Kb | Download |
| Rawdata | INFO_example.txt | example for INFO | 7.86 Mb | Download |
| Rawdata | Manual_refSeq_Selection.docx | manual for refSeq_selection.pyc | 22.55 Kb | Download |
| Rawdata | refSeq_selection.pyc | python script for profile alignment and refSeq_selection | 41.29 Kb | Download |
| Rawdata | SQDB_example.txt | example for Sequence DB | 334.31 Mb | Download |