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Chromosome-scale genome assembly and annotation of the Antarctic monocot plant, Deschampsia antarctica
Deschampsia antarctica É. Desv., the only indigenous grass species in the Antarctic Peninsula and the surrounding islands, has garnered significant garnered significant scientific attention due to its remarkable adaptations to the extreme polar environment. Given the importance of genomic adaptation in plants, particularly in extremophiles like D. antarctica, genome analysis and annotation is crucial for understanding its evolutionary significance and potential adaptive mechanisms. Here, a chromosome-scale assembly is presented for this species. The assembly was generated by Revio HiFi sequencing with proximity ligation Hi-C for the scaffolding and represents 4.755 Gb with 13 pseudochromosomes. The genome assembly statistics presented a contig N50 of 67.2 Mb, a BUSCO (Benchmarking Universal Single-Copy Orthologue) score of 99.1%, collectively signal the achieved high assembly quality. A comprehensive annotation yielded a total of 178,191 genes, and the associated BUSCO score of 98.2% for the annotated sequences attests to their completeness.
- Entry ID
- KOPRI-KPDC-00002817
- ISO Topic
- Biota
- Personnel
- HyoungSeok Lee (soulaid@kopri.re.kr)
- Seung Chul Shin (ssc@kopri.re.kr)
- JungEun Lee (jelee@kopri.re.kr)
- Jin-Hyoung Kim (kimjh@kopri.re.kr)
- Research period
- 2024-01-01 ~ 2025-04-01
- Create/Update Date
- 2025-04-21 / 2025-04-21
- Location
- CONTINENT > ANTARCTICA > ANTARCTIC PENINSULA > Barton Peninsula
- Citation
- The data(KOPRI-KPDC-00002817) used in this work was provided by the Korea Polar Research Institute.
- Spatial Coverage
-
POINT
- lat:-62.153333, lon:-58.473889
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Legend
- Raw Data
- File Size 5.34 Gb for 6 items
Category | File Name | Description | Size | Status |
---|---|---|---|---|
Rawdata | DA_scaffold.fasta | Da chromosome scaffold nucleotide fasta | 4.8 Gb | Request required |
Processing Data | DA_braker.aa.fasta | protein, transcript, coding sequence files | 73.69 Mb | Request required |
Processing Data | DA_braker.aa.t1.fasta | protein, transcript, coding sequence files | 64.97 Mb | Request required |
Processing Data | DA_braker.codingseq.fasta | protein, transcript, coding sequence files | 216.48 Mb | Request required |
Analysis Data | DA_braker_annot.gtf | annotation file | 180.49 Mb | Request required |
Thumbnail | Da_chromosome.jpg | 썸네일 이미지 | 483.22 Kb | Request required |