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KPDC, Korea Polar Data Center

Korea Polar Data Center Scientific observations and results from Antarctica shall
be exchanged and made freely available

Gene annotation of Notothenia rossii

Protein-coding genes of N. rossii (GCA_949606895.1) were predicted using the BRAKER3 annotation pipeline using SRA (ERX4524565-ERX4524570: brain, gonads, muscle, and brain) as RNA-seq evidence. Genome sequences (GCA_949606895.1) were downloaded from NCBI and masked using RepeatMasker with the RepBase library (RepBaseRepeatMaskerEdition-20181026) (v.4.0.7). Protein sequences of Danio rerio (GCA_000002035.4), Takifugu ruburipes (GCA_901000725.2), Xiphophorus maculatus (GCA_002775205.2), Oryzias latipes (GCA_002234675.1), Eleginops maclovinus (GCA_036324505.1), Trematomus bernacchii (GCA_902827165.1), Gymnodraco acuticeps (GCA_902827175.1), Pseudochaenichthys georgianus (GCA_902827115.1), and Cottoperca gobio (GCA_900634415.1) were used as protein hints.

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Entry ID
  • KOPRI-KPDC-00002640
DOI
https://dx.doi.org/doi:10.22663/KOPRI-KPDC-00002640
Copyright
Science Keyword
ISO Topic
Biota
Personnel
  • Seung Chul Shin (ssc@kopri.re.kr)
  • Jin-Hyoung Kim (kimjh@kopri.re.kr)
Project
Research period
2023-12-16 ~ 2024-01-16
Create/Update Date
2024-10-16 / 2024-10-16
Location
OCEAN > SOUTHERN OCEAN > SOUTH SHETLAND ISLANDS
Citation
The data(KOPRI-KPDC-00002640) used in this work was provided by the Korea Polar Research Institute.
Spatial Coverage

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  • lat:-62.260688, lon:-58.306963

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Raw Data
File Size 18.25 Mb for 1 item
Category File Name Description Size Status
Result Notothenia_rossii.protein.fasta protein sequence 18.25 Mb Request required

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